PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_30340
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 288aa    MW: 31613.2 Da    PI: 6.7907
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_30340genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-14206251454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+RR+++Ns+f  Lr+++P+       K++Ka+ L  Av YIk+L
  PEQU_30340 206 NHVEAERQRREKLNSRFYALRSVVPNV-----SKMDKASLLADAVSYIKEL 251
                 899***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-71758IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142158.4E-2163154IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474597.46E-19200264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.59E-15200256No hitNo description
PROSITE profilePS5088817.892202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-12206251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-19206267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-17208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEELISPSSS SSTPSTLQYR LQCLLNSRPE RWAYAIFWRA SPEKTLFSVG DGHFRGNGSH  60
GGDADDMEWF YAISLTRSFA AEDPISPARA YASAAPIWLA GSNALTASGC DRARDAQLHG  120
IQTLVYLSTP DGVLELGSSH LVAEDWSIVH QARAFLSGNP AVLQKNGLWS SVESENSDSE  180
ERIICRRKRG RTPGNTAAPE NSNPANHVEA ERQRREKLNS RFYALRSVVP NVSKMDKASL  240
LADAVSYIKE LRGKVEELER EGKKVKKEGF FEQGSGGCGG MXXXXNAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-24161598195Transcription factor MYC3
4rqw_B1e-24161598195Transcription factor MYC3
4rs9_A1e-24161598195Transcription factor MYC3
4yz6_A1e-24161598195Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020597890.10.0transcription factor MYC4-like
TrEMBLA0A2H3Z8G33e-97A0A2H3Z8G3_PHODC; transcription factor MYC4-like
STRINGXP_008810069.16e-98(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.18e-44bHLH family protein