PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_30592

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

FAR1

Protein Properties

Length: 173aa MW: 19779.8 Da PI: 10.8201

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_30592	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37	1.1e-11	114	173	6	66
FAR1 6 YAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkakl 66 YA+++GF+vrk++s ++++ ++++fvC k+g+++e +++ + r +ra trt+C a++ PEQU_30592 114 YAHHIGFTVRKEHSGFWPNSKKLKTKDFVCGKSGFKKELNDT-ITVRFKRADTRTDCPAMI 173 ***********************************99888.99999*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-9	114	173	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MLVQSHPRRE TSGRGQSRGR GRNHGGQRGG RGDHQVSIST QEVLSISLWK KAAQEEMFVI 60 EKIGMEGPTM EGQVYRGESV AVLVKCYPCL HPRQRNCFMW LSTMRRKPMN NIVYAHHIGF 120 TVRKEHSGFW PNSKKLKTKD FVCGKSGFKK ELNDTITVRF KRADTRTDCP AMI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	3e-06	FAR1-related sequence 6