PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_30901
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ZF-HD
Protein Properties Length: 168aa    MW: 19381.2 Da    PI: 9.841
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_30901genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer38.13.7e-121292958
  ZF-HD_dimer 29 mpsegeegtaaalkCaACgCHRnFHRreve 58
                 mps g+egt +a+kC+AC CHRnFHR+e+e
   PEQU_30901  1 MPS-GKEGTLEAFKCSACHCHRNFHRKESE 29
                 566.899********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.5E-10128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152310.953127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-8129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.87E-1881149IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-2981150IPR009057Homeodomain-like
TIGRFAMsTIGR015651.0E-2788144IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MPSGKEGTLE AFKCSACHCH RNFHRKESEG ISSSSCDCFQ NNGGRKMMEG YITGTRPFPH  60
QMIMPLGAIQ TSESDEMEGY MTRTPIVKKR FRTKFSVEQK EKMLGFAEKV GWRLQKQEES  120
LVQQFCQEIG VKRRVLKVWM HNNKHNLAKK SRNLQLDWST STTTVTDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-24871461675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020584799.11e-124zinc-finger homeodomain protein 3-like
SwissprotO647222e-52ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A2I0W7X21e-107A0A2I0W7X2_9ASPA; ZF-HD homeobox protein
STRINGXP_008808961.14e-77(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.17e-55homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]