PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_31249
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 198aa    MW: 22341.2 Da    PI: 7.3426
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_31249genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79e-056082123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C + F++   L  H+++H
  PEQU_31249 60 YTCSFCRREFRSAQALGGHMNVH 82
                9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.48E-65786No hitNo description
PfamPF139121.1E-56083IPR007087Zinc finger, C2H2
SMARTSM003550.00616082IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2196087IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MNSAKDQIGY LLCARRNSLC RPQLPSFILP PSSNVSWEEQ AFARDSSGEL GGCVWPPRSY  60
TCSFCRREFR SAQALGGHMN VHRRDRARLK EASTHSCETD EDVLNIYPFS SDAPGLKVSV  120
RLEIGRENWK ADELGQGRVR DFCDGDEEIS IKKVKTDNLR MFKSEVNKLG HGPVELDLEL  180
RLGDSPKVKE SRSIIVIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-145582229superman protein
2l1o_A2e-145582229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020591504.11e-145probable transcriptional regulator RABBIT EARS
TrEMBLA0A2I0WN623e-88A0A2I0WN62_9ASPA; Putative transcriptional regulator RABBIT EARS
STRINGGSMUA_Achr10P02390_0012e-35(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.13e-28zinc-finger protein 10