PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_31370
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 228aa    MW: 24692.9 Da    PI: 5.2176
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_31370genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.3e-144086354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                ++h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++++++k+L
  PEQU_31370 40 KSHSEAERRRRERINAHLAKLRTLLPST-----TKTDKASLLAEVIQHVKEL 86
                79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.6283786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-44089No hitNo description
PfamPF000108.2E-124086IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-144195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-144196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-134392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.3E-6123195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAGGSEALLM EGGGMSSAFG ELGKMTAQEI LDAKALAASK SHSEAERRRR ERINAHLAKL  60
RTLLPSTTKT DKASLLAEVI QHVKELKRQT LEIAEESPLP TETDELTVDA TSDENGRLIL  120
TASLCCEDRT DLLPELIKAL KSLHLRTIKA EMTTLGGRFK NVLVITADDC FDSTDGNTDQ  180
QSYSVESIQD ALKAVMERTA AAEEPAAGGS SKRQRTANLS SILEHRSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14550ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020571267.11e-162transcription factor bHLH30-like
SwissprotQ9S7Y15e-73BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A2I0X3B31e-128A0A2I0X3B3_9ASPA; Transcription factor bHLH30
STRINGXP_008782353.11e-102(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-64bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]