PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_31459

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

MYB

Protein Properties

Length: 229aa MW: 26189.6 Da PI: 8.8704

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_31459	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.6	1.4e-13	2	43	7	48
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 eEd++l+++++ +G g W+ ar g++Rt+k+c++rw++yl PEQU_31459 2 EEDLILINYIAIHGEGVWNNLARSAGLKRTGKSCRLRWLNYL 43 9***************************************97 PP
2	Myb_DNA-binding	46	1.2e-14	49	128	1	46
TSSS-HHHHHHHHHHHHHTTTT...................................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...................................tWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ d++ ++G++ +W++Iar ++ gRt++++k++w++ PEQU_31459 49 RGNITPEEQLLIMDLHSRWGNRvhpsrdsickmfflkvrrktisdifmaiallqiavRWSKIARQLP-GRTDNEIKNYWRT 128 7999*************************************************************.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.952	1	47	IPR017930	Myb domain
CDD	cd00167	2.19E-9	2	43	No hit	No description
SuperFamily	SSF46689	2.9E-18	2	47	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-5	2	45	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-11	2	43	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-18	2	50	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.455	44	130	IPR017877	Myb-like domain
SMART	SM00717	9.4E-8	48	132	IPR001005	SANT/Myb domain
Pfam	PF00249	3.9E-11	49	128	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-20	51	69	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.9E-18	102	129	IPR009057	Homeodomain-like
CDD	cd00167	1.32E-6	106	128	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-20	106	134	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MEEDLILINY IAIHGEGVWN NLARSAGLKR TGKSCRLRWL NYLRPDVRRG NITPEEQLLI 60 MDLHSRWGNR VHPSRDSICK MFFLKVRRKT ISDIFMAIAL LQIAVRWSKI ARQLPGRTDN 120 EIKNYWRTRI QKKVKDGESV GCSSSPITND EGSSYNNTGL RVGLEEAMGA QPSHPIYPNA 180 NPQEPFFPAY SESNLGGTYL SVEDFWSTQS FNGVHRDSSM NYDACGFDW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF769480	0.0	KF769480.1 Phalaenopsis equestris MYB transcription factor 15 (MYB15) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020585163.1	1e-137	myb-related protein 305-like
Swissprot	P81391	9e-60	MYB05_ANTMA; Myb-related protein 305
TrEMBL	A0A2I0VIW3	3e-88	A0A2I0VIW3_9ASPA; Myb-related protein 305
STRING	XP_008812482.1	9e-70	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP198	38	330

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27810.1	1e-59	myb domain protein 21

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]