PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_31484

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C3H

Protein Properties

Length: 290aa MW: 33141.4 Da PI: 7.0954

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_31484	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.5	1.3e-09	89	113	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++f++tG+Ck+ + C+++H++ PEQU_31484 89 EPECQYFMKTGYCKFKSACRYHHPK 113 799********************96 PP
2	zf-CCCH	30.5	6.2e-10	224	250	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG+Ck+ + C+F+H++ PEQU_31484 224 PGEPECQHFMKTGYCKFKSACRFHHPK 250 5799*********************96 PP
3	zf-CCCH	26.4	1.2e-08	264	286	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C +++r G Ck+G+ C+F+H PEQU_31484 264 KPSCTHYSR-GNCKFGSACRFNHH 286 678****.***********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	7.7E-5	86	113	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.643	86	114	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-7	89	113	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.71E-6	90	116	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-4	92	115	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.558	223	251	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-4	223	250	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-7	225	250	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.98E-5	227	252	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.2E-4	229	249	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.727	261	288	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.051	262	287	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.7E-6	264	286	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MAKDIFFGVD LMRNFAGRNV PDKLKEEREH IPLLWLIFTS SLVTVTSLLH APDIKTIDQQ 60 QELVSKDAAS EFSGGEPQQF DEYPQRPSEP ECQYFMKTGY CKFKSACRYH HPKSNLSSLS 120 LSLRPASNNS VPFRQDDPVE QLREITLPLE NTSNDQTAFL CPSSSDVPSQ VNVQWNVDQM 180 ATSPLNPPEI KMNLKVQELA NKDTAHEFYG RVESQQIDEY PQRPGEPECQ HFMKTGYCKF 240 KSACRFHHPK SNICFLARPL KPDKPSCTHY SRGNCKFGSA CRFNHHIEHG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020590304.1	1e-174	zinc finger CCCH domain-containing protein 65-like isoform X11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	4e-31	C3H family protein