PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_31514
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family DBB
Protein Properties Length: 189aa    MW: 20454.1 Da    PI: 6.1298
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_31514genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.49.1e-06445541
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                 C+ +e   ++l C  ++  lC  C ++ H        H++ p
  PEQU_31514  4 QCDVCETT-ASLLCCADEAALCWGCDEKVHAAnklagkHQRLP 45
                7*****99.*********************6678888898877 PP
2zf-B_box29.12.1e-0957100238
    zf-B_box   2 eerkCpeHeeke.lqlfCedCqqllCedClleeHkg......Ht 38 
                 ++++C+ ++ek   ++fC +++ llC+ C l++H+       H+
  PEQU_31514  57 KMPCCDICQEKTgFSFFCLEDRALLCRHCDLTIHSAspvvsnHQ 100
                 689*******999*********************6566666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.314146IPR000315B-box-type zinc finger
CDDcd000211.66E-4346No hitNo description
SMARTSM003363.0E-9446IPR000315B-box-type zinc finger
SMARTSM003361.9E-1056104IPR000315B-box-type zinc finger
PfamPF006431.2E-657101IPR000315B-box-type zinc finger
PROSITE profilePS501198.5661104IPR000315B-box-type zinc finger
CDDcd000211.44E-561104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MKIQCDVCET TASLLCCADE AALCWGCDEK VHAANKLAGK HQRLPLLFPG PSSTTFKMPC  60
CDICQEKTGF SFFCLEDRAL LCRHCDLTIH SASPVVSNHQ RFLITGVRVG LQHSVTDNNG  120
SCRGRAATNE LSSSSGSVSS SGNLPVSLAT KSLGVEKTDD FKLCWPWNEI FEGVDFDHCY  180
GLSEPGSSN
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020596969.11e-138B-box zinc finger protein 22-like
RefseqXP_020596970.11e-138B-box zinc finger protein 22-like
SwissprotQ9SYM25e-48BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A385IUB26e-79A0A385IUB2_9ASPA; B-box zinc finger protein-like protein
STRINGGSMUA_Achr11P12670_0015e-69(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121512528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.16e-50light-regulated zinc finger protein 1