PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_32011

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

FAR1

Protein Properties

Length: 242aa MW: 28256.7 Da PI: 10.1727

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_32011	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.1	1.8e-15	21	99	2	81
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 Y+ YA+ vGF+vrk+ ++ ++++i+++++ C k+g+++e++ + ++ + ++a t+tgC+a+l+ + e dg+w + +l PEQU_32011 21 HYDVYAHYVGFTVRKDPITYWAKSKKIKSKDYICGKSGHKRESQLA-TTVKYRKADTQTGCQAMLRYTIELDGNWTIRNL 99 69**************************************9999.88889999********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.1E-13	21	99	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
DPIAPSFLNT VVRNEEEAYK HYDVYAHYVG FTVRKDPITY WAKSKKIKSK DYICGKSGHK 60 RESQLATTVK YRKADTQTGC QAMLRYTIEL DGNWTIRNLL KVIITHWRNP VTSTFYDSRR 120 ISGLNANLLR SMTVLGLEQL MHSISLLQRL MVFKTWSALD KMHTTSFKGI KEAELNRAMP 180 TLSYNYSWXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXN 240 QS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020584372.1	2e-64	putative protein FAR1-RELATED SEQUENCE 10

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	3e-07	FAR1 family protein