PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_32051
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family M-type_MADS
Protein Properties Length: 149aa    MW: 16857.4 Da    PI: 10.2578
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_32051genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.21.6e-161356245
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 ie k  r v fskRr g++KKA ELS+L +a++  ++fs+ gk
  PEQU_32051 13 LIERKDSRLVCFSKRRSGLFKKARELSILSGAQIGALVFSPAGK 56
                699999***********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.296456IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-23469IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-20566IPR002100Transcription factor, MADS-box
CDDcd001201.44E-23559No hitNo description
PRINTSPR004041.5E-14626IPR002100Transcription factor, MADS-box
PfamPF003195.3E-201458IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-142641IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-144162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MAGGGRKKTE LKLIERKDSR LVCFSKRRSG LFKKARELSI LSGAQIGALV FSPAGKPFVS  60
DAGEECWSTV RRRCQASSRW IARRESRRLE NESGELQLQT DEGNNILLNG LLVYSVREKN  120
FSSSRFSSVL KMYCPPSFLV FLEDDLVYV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020589966.11e-104MADS-box transcription factor 2-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.14e-16AGAMOUS-like 29