PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_32052
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family M-type_MADS
Protein Properties Length: 71aa    MW: 7684.19 Da    PI: 11.2707
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_32052genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.92.7e-181256145
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                k ie+k  r v fskRr g++KKA ELS+L +a++  ++fs+ gk
  PEQU_32052 12 KLIESKQSRLVCFSKRRSGLFKKARELSILSGAQIGALVFSPAGK 56
                569***************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.563456IPR002100Transcription factor, MADS-box
SMARTSM004325.1E-24463IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-21559IPR002100Transcription factor, MADS-box
CDDcd001205.16E-24559No hitNo description
PRINTSPR004044.8E-15626IPR002100Transcription factor, MADS-box
PfamPF003192.3E-211458IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-152641IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-154162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MAGGGRKKTE LKLIESKQSR LVCFSKRRSG LFKKARELSI LSGAQIGALV FSPAGKPFVS  60
DVAAMDFLLK I
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020578254.16e-38agamous-like MADS-box protein AGL29
SwissprotO647031e-14AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBLA0A1L1WKX04e-25A0A1L1WKX0_9ASPA; MADS34
STRINGXP_008788342.12e-19(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.15e-17AGAMOUS-like 29
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]