PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_32346

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

CAMTA

Protein Properties

Length: 400aa MW: 44759.8 Da PI: 9.4928

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_32346	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	57.1	3.6e-18	258	296	36	74
CG-1 36 sgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLK 74 gsl+L+nr++ r+frkDG+ w+kkk+g++v E+he+LK PEQU_32346 258 GGSLFLFNRRIHRFFRKDGHMWRKKKNGRAVGEAHERLK 296 69************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	19.368	232	361	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.0E-4	236	327	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.8E-13	258	296	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MYVCPPYPKT MTSVCSHIDA ARHAAPESYR GHLLVAIAST LRSYATILAG DIPNSTRVPL 60 SGSEPGFGIN EEYHFQAVLP LVAPAFEHSI PATGFEHGTL ESHETSPHTT TTDPNAFISL 120 IVIEEDSHAK THQSSFDPIK DQLIQQVDAP MFNNLHMRKK KSGGRLELRN LLDDALVTTG 180 NDTHLAILLA VSLPRTRGKD RVIQDTFTIY SRVYKGGPWL PFWKLIYRYL SWCISMCEEA 240 QGSFALVERC FGMIVMRGGS LFLFNRRIHR FFRKDGHMWR KKKNGRAVGE AHERLKHLIG 300 GATVKKLKEN PYKTVGLRIG WLARSVALPT PSSCRWNGSF SRSPLACPIV AQAPYSLSNL 360 ILCEDLILCL SRTPVWGVCS SRFLEPNTIL RSLILFLSSI

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MYVCPPYPKT MTSVCSHIDA ARHAAPESYR GHLLVAIAST LRSYATILAG DIPNSTRVPL  60
SGSEPGFGIN EEYHFQAVLP LVAPAFEHSI PATGFEHGTL ESHETSPHTT TTDPNAFISL  120
IVIEEDSHAK THQSSFDPIK DQLIQQVDAP MFNNLHMRKK KSGGRLELRN LLDDALVTTG  180
NDTHLAILLA VSLPRTRGKD RVIQDTFTIY SRVYKGGPWL PFWKLIYRYL SWCISMCEEA  240
QGSFALVERC FGMIVMRGGS LFLFNRRIHR FFRKDGHMWR KKKNGRAVGE AHERLKHLIG  300
GATVKKLKEN PYKTVGLRIG WLARSVALPT PSSCRWNGSF SRSPLACPIV AQAPYSLSNL  360
ILCEDLILCL SRTPVWGVCS SRFLEPNTIL RSLILFLSSI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	8e-14	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains