PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_32624

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

FAR1

Protein Properties

Length: 130aa MW: 15586.7 Da PI: 9.138

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_32624	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42.8	1.8e-13	55	130	2	78
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwev 78 Y+ YA+ +GFsvrk++ + ++++i++++fvC k ++e k + e+ + +r+e+r gC a+++ +++++w v PEQU_32624 55 VYCVYAHYIGFSVRKKHATFWPNSRNIMTKEFVCGKTYLKKELKIT-ETVKYRRTESRSGCPAMIRYAVDEESNWTV 130 79********************************9999998888.899999********************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.7E-12	55	130	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MRLFDRDRNG SLHRGRVHRQ EQYWQFGESE VTCTEQTTNM LLQTMVHNEK EAYEVYCVYA 60 HYIGFSVRKK HATFWPNSRN IMTKEFVCGK TYLKKELKIT ETVKYRRTES RSGCPAMIRY 120 AVDEESNWTV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020592536.1	3e-50	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2I0VS86	2e-25	A0A2I0VS86_9ASPA; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2I0VV98	3e-25	A0A2I0VV98_9ASPA; Protein FAR1-RELATED SEQUENCE 5

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-06	FAR1-related sequence 6