PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_32685

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

WRKY

Protein Properties

Length: 340aa MW: 37667.7 Da PI: 10.5331

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_32685	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.9	7.5e-32	274	331	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh+ PEQU_32685 274 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHN 331 9**********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	5.1E-19	225	270	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	3.6E-34	260	332	IPR003657	WRKY domain
PROSITE profile	PS50811	30.159	267	333	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-27	270	331	IPR003657	WRKY domain
SMART	SM00774	3.4E-39	272	332	IPR003657	WRKY domain
Pfam	PF03106	1.6E-27	274	330	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MEEVEAANRA AVESGHRLLS LLASKAEDEV QHRRNIVVET GEAVSRFRKL AALLGNGMGH 60 ARVKRAKPSA QLTPFNHQKL VLDSTLAAKA SPSTNLLPRT GDLDRKMFLE NKPLPQIHSA 120 PNPVQLASQF QYLHQHQQHQ QNQAFQLQQQ IKFQAEMLRR GNNGGINLKF DTPSCSQTIS 180 STTRSFLSSL SIDASGSVSG LDTKSFNLIG GPQSSEPSNL HPNSRRKCTG RGEDGSGKCS 240 SSGRCHCSKK RKLRVKRSIK VPAISNKLAD IPPDEYSWRK YGQKPIKGSP HPRGYYKCSS 300 MRGCPARKHV ERCLEDPSML IVTYEGEHNH NRLMSQSAQT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-20	265	331	7	72	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ081267	2e-78	JQ081267.1 Gossypium hirsutum WRKY6 transcription factor (WRKY6) mRNA, complete cds.
GenBank	KF220642	2e-78	KF220642.1 Gossypium hirsutum WRKY39-1 (WRKY39-1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020578068.1	0.0	probable WRKY transcription factor 21
Refseq	XP_020578069.1	0.0	probable WRKY transcription factor 21
Refseq	XP_020578070.1	0.0	probable WRKY transcription factor 21
Swissprot	Q93WU6	4e-97	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A2I0VHP0	0.0	A0A2I0VHP0_9ASPA; Putative WRKY transcription factor 74
STRING	XP_008805954.1	1e-144	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2859	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	3e-77	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]