PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_32696
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 379aa    MW: 41097.1 Da    PI: 6.6571
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_32696genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-1865110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++eEd +l ++v+++G+++W++Iar ++ gR++k+c++rw + 
       PEQU_32696  65 KGPWSPEEDAILSRLVAKFGPRNWSLIARGVP-GRSGKSCRLRWCNQ 110
                      79******************************.***********985 PP
2Myb_DNA-binding53.17.3e-17117161147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T+eEd +++ a+  +G++ W+ Iar +  gRt++ +k++w++ 
       PEQU_32696 117 RKPFTEEEDRIIIAAHSVHGNK-WAVIARLLE-GRTDNAIKNHWNST 161
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.02660115IPR017930Myb domain
SuperFamilySSF466892.59E-3162158IPR009057Homeodomain-like
SMARTSM007171.0E-1664113IPR001005SANT/Myb domain
PfamPF002494.5E-1865110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2766118IPR009057Homeodomain-like
CDDcd001677.85E-1667109No hitNo description
SMARTSM007173.1E-16116164IPR001005SANT/Myb domain
PROSITE profilePS5129422.895116166IPR017930Myb domain
PfamPF002493.0E-14117161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-23119165IPR009057Homeodomain-like
CDDcd001672.97E-12119162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
ASMGSSADHM AVDETPPPQP SENLACSPPP LPPPSSPSVS IECSGSQAEG FVMKSITASK  60
EDRVKGPWSP EEDAILSRLV AKFGPRNWSL IARGVPGRSG KSCRLRWCNQ LDPHVKRKPF  120
TEEEDRIIIA AHSVHGNKWA VIARLLEGRT DNAIKNHWNS TLRRKCIEFE SSKPAPCEGQ  180
EDNSADILDK TKGSSEETQS FEDVKAITST EGRDISSVES LSHYFEDRAN TVGPEFKQPS  240
AIFRPVARLS AFSPYHPGLS HATTSLLSRA SPLNASLFRV CMSGSGDCKL LDNILWEPQV  300
PSRCGHGCCG TKTRDQNSSS LLGPEFVEFV ESPPILHREI ASMANELSNV AWLKSGLQTG  360
IYSSCQANPS SSSCTASTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-41641653104C-Myb DNA-Binding Domain
1msf_C2e-41641653104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4859054e-49AF485905.1 Dendrobium sp. XMW-2002-14 MYB14 (MYB14) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020599849.10.0transcription factor MYB1-like
TrEMBLA0A455LA890.0A0A455LA89_9ASPA; Transcription factor MYB1-like protein
STRINGXP_008785463.11e-122(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.15e-85myb domain protein 109