PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_32778
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ARF
Protein Properties Length: 649aa    MW: 72438 Da    PI: 7.0009
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_32778genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.17.1e-2379180199
                 EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                 f k+lt sd++++g +++ +++a+e+     +++++ +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +++el+v
  PEQU_32778  79 FSKILTASDTSTHGGFSVLRRHANEClptldMSQPTPTQELCAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGENGELRV 175
                 889****************************77777888*************************************************..4499999** PP

                 EEE-S CS
          B3  95 kvfrk 99 
                 +v r+
  PEQU_32778 176 GVKRA 180
                 *9886 PP
2Auxin_resp101.11.5e-33205284183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t++ F+v+Y+Pr   s+F+v v+k+++a+++k+svGmRf m+fe+ed +e+r+ Gt+vgv d+++ +W++SkWr+Lk
  PEQU_32778 205 ASHAVTTQTLFTVCYKPRI--SQFIVGVNKYLEAINNKFSVGMRFMMRFEGEDTPEKRYNGTIVGVGDMSS-QWEGSKWRQLK 284
                 689***************8..9**********************************************888.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.15E-3870208IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-3976193IPR015300DNA-binding pseudobarrel domain
CDDcd100179.13E-2078179No hitNo description
SMARTSM010191.9E-2179181IPR003340B3 DNA binding domain
PROSITE profilePS5086312.32379181IPR003340B3 DNA binding domain
PfamPF023626.4E-2179180IPR003340B3 DNA binding domain
PfamPF065072.5E-31205284IPR010525Auxin response factor
PfamPF023098.7E-8456567IPR033389AUX/IAA domain
SuperFamilySSF542777.19E-13526607No hitNo description
PROSITE profilePS5174528.83531623IPR000270PB1 domain
PfamPF023096.6E-7572620IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MEQLEASTNQ ELDERIPLFN LPSGRSKILC RVINVELRAE HETDEVYAQI TLLPEADQSE  60
LSTADPCLPE LQRPVVNSFS KILTASDTST HGGFSVLRRH ANECLPTLDM SQPTPTQELC  120
AKDLHGYEWR FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DAFVFLRGEN GELRVGVKRA  180
SCQQSTIPSS VISCQSMHLG VLATASHAVT TQTLFTVCYK PRISQFIVGV NKYLEAINNK  240
FSVGMRFMMR FEGEDTPEKR YNGTIVGVGD MSSQWEGSKW RQLKVQWDEP TNIQRPNRVS  300
PWEIEPYNPL ASNVSAPPPL CTKSKRPRPS FDLTDPSPSD ASSPFWYSAA ARTCDLGPLS  360
TPVIWPPRTK AADKGNNTIK TPNFNSCDRW LKEQPSSFIA STSSYNDASL KLFQDAALET  420
KVTFPNTHSI TSQILEDPAK KMSSGTDESK KSENCSAYRL FGINLVNLVN SSASSTNKKT  480
EAAVIEHPQV HVTSIEESDQ LSELSKSSKS SKLAVQVSQK EIQSRTSSST RNRIKVHMHG  540
VAVGRAVDLM HLGGYDELIS GLEKMFEISG ELCQRDKWAL VFTDDEGDMM LVGDDPWPEF  600
CDMVRKIYIY PSEEVKKLNP SKFPEPPPNN LKMNQESVIL PPLSSRPGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-148130849356Auxin response factor 1
4ldw_A1e-148130849356Auxin response factor 1
4ldw_B1e-148130849356Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324328KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020573431.10.0auxin response factor 11-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2I0WQD60.0A0A2I0WQD6_9ASPA; Auxin response factor
STRINGXP_008783166.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.10.0auxin response factor 18