PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_32877

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NF-YB

Protein Properties

Length: 109aa MW: 12185.9 Da PI: 4.7555

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_32877	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	34.5	4.9e-11	50	104	30	84
NF-YB 30 daketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 d+ e + fi ++++ a+d c++ kr+tin++d++ al ++ f ++++pl+ PEQU_32877 50 DTLLAFSESARIFIHYLSATANDICKESKRQTINAEDVFKALVDMEFPEFIQPLR 104 555566788999*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.4E-24	10	107	IPR009072	Histone-fold
SuperFamily	SSF47113	4.69E-19	11	107	IPR009072	Histone-fold
Pfam	PF00808	4.5E-8	47	91	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
MPAPSVVVEE LPKTIVRRLV KDKLSQLSSS SSEKAKSDEV GDEEMMLHKD TLLAFSESAR 60 IFIHYLSATA NDICKESKRQ TINAEDVFKA LVDMEFPEFI QPLRDSLGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020599365.1	1e-73	DNA polymerase epsilon subunit 3 isoform X1
TrEMBL	A0A2I0V9Y4	5e-54	A0A2I0V9Y4_9ASPA; Nuclear transcription factor Y subunit B-1
STRING	Aquca_072_00118.1	2e-41	(Aquilegia coerulea)
STRING	XP_010031521.1	2e-40	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10414	37	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	8e-32	nuclear factor Y, subunit B11