PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_33116

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

HB-other

Protein Properties

Length: 230aa MW: 25941.9 Da PI: 7.919

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_33116	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.5	1.8e-11	1	40	18	57
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 lF +++yp++ ++ e ++k+gL+e+qV+ WF+ rR k+kk PEQU_33116 1 LFPEHKYPTEVMKLEFSEKIGLSEKQVSGWFCHRRLKDKK 40 5899**********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00046	4.9E-9	1	40	IPR001356	Homeobox domain
PROSITE profile	PS50071	13.005	1	41	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.68E-10	2	47	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.7E-12	2	40	IPR009057	Homeodomain-like
CDD	cd00086	2.72E-8	2	41	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
LFPEHKYPTE VMKLEFSEKI GLSEKQVSGW FCHRRLKDKK TLQGEICTNG KQNLSSSAVH 60 DRISGVKQES CSSTKQVDRN LDFKEVESKM YYGYRPCSDV LAYETSNKHP RTGIDHVAED 120 RSSGSSSASQ GSYLESHENP YVVQASGYKL CNDSGILMSN KNRVMKSNEN MGKPRHSFMR 180 VENDTPAISE LKWKLGSHYR EDGPLLGFEF DPIPPGAFDS PTRDSKFGNT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020598808.1	1e-167	homeobox-DDT domain protein RLT1 isoform X3
TrEMBL	A0A2I0WL68	1e-116	A0A2I0WL68_9ASPA; Uncharacterized protein
STRING	XP_008782006.1	2e-66	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP25496	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	9e-36	HB-other family protein