PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_33149
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 200aa    MW: 22246.6 Da    PI: 9.1092
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_33149genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.2e-14250455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                +h ++Er+RR+++N+ ++ Lr+l+P +   ++++ + a+i+  A++Y+k+Lq
  PEQU_33149  2 THIAVERNRRKQMNEYLAVLRSLMPAS---YAQRGDQASIVGGAINYVKELQ 50
                8**************************...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.35E-12154No hitNo description
SuperFamilySSF474598.77E-17165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.402149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-12250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-14263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-11455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MTHIAVERNR RKQMNEYLAV LRSLMPASYA QRGDQASIVG GAINYVKELQ QIVQFLEVRK  60
QLKHRGDNRV QDLKPLASFF SFPQYSLTHT AATAAGGVDT VPANPSAVAD IEVTIVESHA  120
SLKILCRRRP KQLLKLVVGL QSLRLSTLHL NATTFGAMVL FTFSLKVEED CQLATVDEIA  180
TAVHQLVVRI HEEEGFYTSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020593000.11e-145transcription factor bHLH94-like
SwissprotQ9C7T43e-70BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2I0VHB11e-121A0A2I0VHB1_9ASPA; Transcription factor bHLH96
STRINGXP_008776945.18e-83(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.14e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]