PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_33205
Common NameSEP1
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28192 Da    PI: 9.0897
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_33205genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.55.6e-31959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtf+kRrng+lKKA+ELSvLC+aeva+iifs++gklye++s
  PEQU_33205  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSNRGKLYEFCS 59
                79***********************************************96 PP
2K-box1011.6e-338317310100
       K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  +++++s+qqe+ kLk+++e Lqr+qR+llGedL++L+ keL+qLe+qL++slk+iRs++++++l+q+ +lq++e++l e+nk+L+++lee
  PEQU_33205  83 ISRETQSSQQEYLKLKSRVEALQRSQRNLLGEDLGPLNSKELEQLERQLDNSLKQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRRLEE 173
                 56789**********************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.039161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-33286IPR002100Transcription factor, MADS-box
CDDcd002655.34E-44276No hitNo description
PRINTSPR004044.4E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-323859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-2685171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.41787177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0048481Biological Processplant ovule development
GO:0048833Biological Processspecification of floral organ number
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCE AEVALIIFSN RGKLYEFCSS  60
SSMLKTLERY QKNNYGAPET NIISRETQSS QQEYLKLKSR VEALQRSQRN LLGEDLGPLN  120
SKELEQLERQ LDNSLKQIRS TRTQFMLDQL ADLQRREQML CEANKTLKRR LEESNQANPQ  180
QIWDPSTAHA MGYDQRQPVQ PHGEAFYHPL ECEPTLHIGY HSDLSIAPMA APNVNNYMPP  240
GWLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-41751711101Developmental protein SEPALLATA 3
4ox0_B4e-41751711101Developmental protein SEPALLATA 3
4ox0_C4e-41751711101Developmental protein SEPALLATA 3
4ox0_D4e-41751711101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor active in inflorescence development and floral organogenesis. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00605ChIP-seqTransfer from AT1G24260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6738570.0KF673857.1 Phalaenopsis equestris SEPALLATA-like MADS-box protein 1 (SEP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020599713.10.0agamous-like MADS-box protein AGL9 homolog isoform X2
SwissprotQ386941e-155AGL9_ARADE; Agamous-like MADS-box protein AGL9 homolog
TrEMBLX5CQZ90.0X5CQZ9_PHAEQ; SEPALLATA-like MADS-box protein 1
STRINGXP_008801850.11e-142(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34833469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-111MIKC_MADS family protein
Publications ? help Back to Top
  1. Pan ZJ, et al.
    Flower development of Phalaenopsis orchid involves functionally divergent SEPALLATA-like genes.
    New Phytol., 2014. 202(3): p. 1024-42
    [PMID:24571782]