PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_33250
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HD-ZIP
Protein Properties Length: 288aa    MW: 32150.9 Da    PI: 5.7494
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_33250genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41e-1792145356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  PEQU_33250  92 KKRRLNMEQVRTLERNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 145
                 456899***********************************************9 PP
2HD-ZIP_I/II127.27.2e-4191182192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrl+ eqv++LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdyeaLkr+++ ++++n++L++++++L++el 
   PEQU_33250  91 EKKRRLNMEQVRTLERNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEALKREFEIIRSQNDALHEHNKKLQSELL 182
                  69**************************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.65E-1986149IPR009057Homeodomain-like
PROSITE profilePS5007116.8687147IPR001356Homeobox domain
SMARTSM003892.6E-1790151IPR001356Homeobox domain
PfamPF000464.2E-1592145IPR001356Homeobox domain
CDDcd000862.25E-1592148No hitNo description
Gene3DG3DSA:1.10.10.601.3E-1894154IPR009057Homeodomain-like
PRINTSPR000311.1E-5118127IPR000047Helix-turn-helix motif
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5127143IPR000047Helix-turn-helix motif
PfamPF021832.0E-13147187IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MTYNGFPSSS SSSPPPPNFF QRGFLFHPSV ETECHQLSPI LPSTPCVNSQ DFGGVAAMLG  60
KRSVWSEEMA AGGGGCGGEE ELSDDCSLPG EKKRRLNMEQ VRTLERNFEL GNKLEPERKM  120
QLARALGLQP RQIAIWFQNR RARWKTKQLE KDYEALKREF EIIRSQNDAL HEHNKKLQSE  180
LLTLKGREGA ELINLNKETE GSSSNRSENS CDINLDISRT AAIDGPLNPN QSSRQFFPSY  240
RPSLNVTQLP KIENAVTAGG GGGGSNDENF CNMFCGVEEP GFWPWTEH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020598427.10.0homeobox-leucine zipper protein HOX21-like isoform X3
SwissprotQ8S7W93e-84HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A2I0W7251e-174A0A2I0W725_9ASPA; Homeobox-leucine zipper protein HOX21
STRINGXP_008797128.11e-107(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.12e-81HD-ZIP family protein