PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_33650
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family LSD
Protein Properties Length: 183aa    MW: 19395 Da    PI: 8.7691
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_33650genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.41.1e-132751125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                C+gCr+lL YP+GA+sV+Ca+C++V
  PEQU_33650 27 CSGCRNLLLYPLGATSVCCAVCNAV 51
                ************************9 PP
2zf-LSD1468.3e-156690125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                CggC+tlL+Y rGA+sV+C++C+t+
  PEQU_33650 66 CGGCHTLLMYIRGATSVQCSCCHTI 90
                ***********************97 PP
3zf-LSD141.42.4e-13142166125
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                 Cg+Cr lL+Y +GA+sV+Ca+C++V
  PEQU_33650 142 CGNCRMLLMYQYGARSVKCAVCNFV 166
                 ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.4E-122454IPR005735Zinc finger, LSD1-type
PfamPF069437.5E-112751IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:3.90.10.104.3E-444147No hitNo description
TIGRFAMsTIGR010531.5E-146392IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-126690IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.7E-11139169IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-12142166IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MPVPLAPYPS PPAPFTPPSG GQSQLVCSGC RNLLLYPLGA TSVCCAVCNA VTNVPPPGTE  60
MAQLVCGGCH TLLMYIRGAT SVQCSCCHTI NLALEGGKGL KLLEKLDPKV LKVLVRRGVK  120
LLMGVTTSTH APHTNQVAHV SCGNCRMLLM YQYGARSVKC AVCNFVTSVG VSIHLITRSF  180
TYF
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026401599.17e-78protein LSD1
RefseqXP_026401600.17e-78protein LSD1
SwissprotQ0J7V93e-66LSD1_ORYSJ; Protein LSD1
SwissprotQ93ZB12e-66LOL1_ARATH; Protein LOL1
TrEMBLA0A2G5CN891e-76A0A2G5CN89_AQUCA; Uncharacterized protein
STRINGAquca_044_00148.12e-77(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.36e-54lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]