PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_33654
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ARF
Protein Properties Length: 453aa    MW: 51227.6 Da    PI: 7.0303
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_33654genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.6e-23178279199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d +   W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  PEQU_33654 178 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDIHDVDWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 272
                 99*****************************8544444..48************************************************..8899999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  PEQU_33654 273 LLGIRRA 279
                 ****997 PP
2Auxin_resp118.55.5e-39304387183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++Y+Pra++seFv++++k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldp+rWpnS+Wrs+k
  PEQU_33654 304 AAHAAATNSRFTIFYHPRACPSEFVIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPIRWPNSHWRSVK 387
                 79********************************87599******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.55E-49162307IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-41171293IPR015300DNA-binding pseudobarrel domain
CDDcd100171.44E-20177278No hitNo description
SMARTSM010197.5E-23178280IPR003340B3 DNA binding domain
PfamPF023622.4E-21178279IPR003340B3 DNA binding domain
PROSITE profilePS5086312.21178280IPR003340B3 DNA binding domain
PfamPF065077.2E-34304387IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MVEEYKELTL ALTKENKRLK EQVTKILTSE EYVEALTEQL WTDMVLVAEL FIKAGLVEPK  60
WPEMGGDKRC LNSELWHACA GPLVCLPNVG TRVVYFPQGH SEQVVASTNK EVEGHIPNYP  120
NLPPQLICQL HDVTMHADAE TDEVYTQMTL QPLNPQELKD TYLPAEMGLP SKQPMNYFCK  180
TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDIHDVDWKF RHIFRGQPKR  240
HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQNAVPSSV ISSDSMHIGL  300
LAAAAHAAAT NSRFTIFYHP RACPSEFVIP LSKYVKAVFH TRVSVGMRFR MLFETEESSV  360
RRYMGTITGI SDLDPIRWPN SHWRSVKVNW DESTAGDRQS RASLWEIEPL TTFPMYPSLF  420
PLRLKSPWYT GVSSLNVTTN YGLDLDSVVN SAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1686340843388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020596937.10.0LOW QUALITY PROTEIN: auxin response factor 12-like
SwissprotQ0J9510.0ARFL_ORYSJ; Auxin response factor 12
SwissprotQ258Y50.0ARFL_ORYSI; Auxin response factor 12
TrEMBLA0A2I0WED10.0A0A2I0WED1_9ASPA; Auxin response factor
STRINGAquca_002_01425.10.0(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58503039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi Y, et al.
    OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa).
    New Phytol., 2012. 193(1): p. 109-20
    [PMID:21973088]
  3. Shen WJ,Ruan XL,Li XS,Zhao Q,Li HP
    RNA silencing suppressor Pns11 of rice gall dwarf virus induces virus-like symptoms in transgenic rice.
    Arch. Virol., 2012. 157(8): p. 1531-9
    [PMID:22592958]
  4. Wang S, et al.
    Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa).
    New Phytol., 2014. 201(1): p. 91-103
    [PMID:24111723]
  5. Fan J, et al.
    Infection of Ustilaginoidea virens intercepts rice seed formation but activates grain-filling-related genes.
    J Integr Plant Biol, 2015. 57(6): p. 577-90
    [PMID:25319482]