PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_33787
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family M-type_MADS
Protein Properties Length: 384aa    MW: 43647.6 Da    PI: 4.2452
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_33787genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.61.4e-121251443
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                en++ r+ t+  R +g+  KA+ELSvLC+++v+v  fs++
  PEQU_33787 12 ENYRARHATYMTRITGLKRKAFELSVLCGVDVLVASFSPE 51
                8**********************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.01E-15177IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-10160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.736149IPR002100Transcription factor, MADS-box
CDDcd002665.10E-15275No hitNo description
PfamPF003197.0E-111251IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGRAKLEMKY RENYRARHAT YMTRITGLKR KAFELSVLCG VDVLVASFSP ELNAVQSWPE  60
KDSDEFRRIK ERYVQFRRSE MGSQNHSTIF PSLPLVSQEM LAMRSKLIEI RERLSFLEAE  120
ASPNAAMVSS QFQQDQTAPQ EQNTIPLTPF LDDISMDDIF TAGTELHISN TIRLTEIRER  180
LSFLEGEASS NAAMVSSQFQ QDQTAPQEQN TIPLTPFLDD FSMDDIFTAG TEHHSSNTIP  240
LTEIRERLSF LEAEASSNAA MVSSQFQQDQ TAPQEQKTIP LTSFLNDFSM DDIFTTGTEH  300
HSSNTIPLTE IRERLSFLEA SNAAMVSSQF QQDQTAPQEQ NTIPLTPFLD DISMEDLSRF  360
FLSDSPMTTS VEDFNWCDTL LDYD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020596672.10.0uncharacterized protein LOC110036539
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16694411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.12e-11AGAMOUS-like 30