PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_33827
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 129aa    MW: 14833.1 Da    PI: 10.1799
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_33827genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd +l+ +++q G+g +W   ++++g++R++k+c++rw++yl
       PEQU_33827 14 KGQWSPEEDAKLKSYIEQNGTGgNWIPLPQKVGLKRCGKSCRLRWLNYL 62
                     799*********************************************7 PP
2Myb_DNA-binding44.43.9e-1469111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++++eE+ ++  ++ + G++ W++Ia+ ++ gRt++++k++w++
       PEQU_33827  69 GSFSEEEENIICSLFVRIGSR-WSLIAAQLP-GRTDNDIKNYWNT 111
                      78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.35962IPR017930Myb domain
SuperFamilySSF466899.58E-2612109IPR009057Homeodomain-like
SMARTSM007173.6E-101364IPR001005SANT/Myb domain
PfamPF002491.0E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-231569IPR009057Homeodomain-like
CDDcd001673.16E-71762No hitNo description
PROSITE profilePS5129422.06563117IPR017930Myb domain
SMARTSM007175.2E-1267115IPR001005SANT/Myb domain
PfamPF002494.7E-1369111IPR001005SANT/Myb domain
CDDcd001674.12E-870113No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MGRAPCCDKE KVKKGQWSPE EDAKLKSYIE QNGTGGNWIP LPQKVGLKRC GKSCRLRWLN  60
YLRPNLKHGS FSEEEENIIC SLFVRIGSRW SLIAAQLPGR TDNDIKNYWN TKLKKKLLST  120
YPSDHARVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-23141177108B-MYB
1h8a_C7e-231111724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020593379.16e-85transcription factor RAX3-like
SwissprotQ9M2Y91e-74RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A2C9US426e-74A0A2C9US42_MANES; Uncharacterized protein
STRINGcassava4.1_030696m1e-74(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.16e-77myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]