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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PEQU_33935 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 112aa MW: 12912.7 Da PI: 9.7819 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 45.2 | 3.1e-14 | 5 | 74 | 19 | 90 |
FAR1 19 skkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
s++ ++++i++++f C k g++e++ ++ + + ++a trtgC+a+++ + +g+w v+k+ + Hn +la
PEQU_33935 5 SSYWPNSKKIKTKDFICEKAGQKESNPTD--TVKFRKADTRTGCQAMVRYAIDVEGNWIVKKFIESHNYSLA 74
444567899****************9988..7888999******************************9986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 8.6E-12 | 4 | 74 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 112 aa Download sequence Send to blast |
MKDHSSYWPN SKKIKTKDFI CEKAGQKESN PTDTVKFRKA DTRTGCQAMV RYAIDVEGNW 60 IVKKFIESHN YSLAKSVDKH LVRSSRKISE LNADLLNADL HDRIRDLSNI CI |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020592994.1 | 3e-43 | uncharacterized protein LOC110033378 | ||||
| TrEMBL | A0A2I0X9W0 | 3e-27 | A0A2I0X9W0_9ASPA; Protein FAR1-RELATED SEQUENCE 5 | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP1212 | 5 | 87 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G59470.2 | 1e-09 | FAR1 family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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