PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_35078
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family WRKY
Protein Properties Length: 365aa    MW: 41618.3 Da    PI: 9.1388
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_35078genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.33.2e-332482160
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
                ++DgynWrKYGqK+vkgse+prsYY+Ct ++Cp++kkvers  d++++ei+Y+g+Hnh+k
  PEQU_35078 24 VEDGYNWRKYGQKQVKGSENPRSYYKCTNPNCPTRKKVERSL-DGHIIEIIYKGNHNHSK 82
                58****************************************.***************85 PP
2WRKY105.52.7e-33191249159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d ++v++tYeg+Hnh+
  PEQU_35078 191 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTSGCSVRKHVERASTDLRAVITTYEGKHNHD 249
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-281983IPR003657WRKY domain
SuperFamilySSF1182905.62E-252183IPR003657WRKY domain
SMARTSM007741.6E-352482IPR003657WRKY domain
PROSITE profilePS5081123.9042583IPR003657WRKY domain
PfamPF031065.7E-252580IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-36176251IPR003657WRKY domain
SuperFamilySSF1182908.5E-29183251IPR003657WRKY domain
PROSITE profilePS5081138.285186251IPR003657WRKY domain
SMARTSM007743.2E-37191250IPR003657WRKY domain
PfamPF031061.2E-25192249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MQTSNQAEYS SNHSAKGFRE RRKVEDGYNW RKYGQKQVKG SENPRSYYKC TNPNCPTRKK  60
VERSLDGHII EIIYKGNHNH SKPQCTRKNS SSFQGLDSSI HHKERDHSIN GKFCVTKDSI  120
TTENSSASFG DEDIDMISQS LITGGDGYDE NELDTKKWKM EGGDDGISYL GSRTVREPKV  180
VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTS GCSVRKHVER ASTDLRAVIT  240
TYEGKHNHDV PISRGSIVLA NKTLYENNRN KNNNNIYNMN NYIMPIKPSV VESRPGRMAY  300
DSFFGTKSNE LDGIGISKFD DSMNLLFAKS LQQQNQLQQL QQGQIMLTKA KEEPRDDFFI  360
DSLLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-3924251877Probable WRKY transcription factor 4
2lex_A6e-3924251877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020596449.10.0probable WRKY transcription factor 26
SwissprotQ6B6R41e-114WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2H3YUQ31e-130A0A2H3YUQ3_PHODC; WRKY transcription factor WRKY24-like
STRINGXP_008804160.11e-131(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-97WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]