PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_35411

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

FAR1

Protein Properties

Length: 282aa MW: 32852.7 Da PI: 9.9879

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_35411	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.7	1.5e-07	169	211	48	90
FAR1 48 tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 t++ + ++a rtgC+a+++ + +g+w v+k+ + nH+la PEQU_35411 169 TDTVKFRKADMRTGCQAMVRYAIDVEGNWIVKKFIESRNHPLA 211 45667789999******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-5	166	211	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MVELRRARGN DXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 60 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 120 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXKESNPTD TVKFRKADMR 180 TGCQAMVRYA IDVEGNWIVK KFIESRNHPL AESGDKHLPR SSKKISELNA DLLKSMKKSE 240 IRATDAYNFM ATEVGGAKVL FGVGFLSDET IYSFIWLFKA FI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	6e-07	FAR1 family protein