PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_36005

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

ZF-HD

Protein Properties

Length: 266aa MW: 30116.3 Da PI: 9.0757

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_36005	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.8	2.3e-32	71	126	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +v+YkeClkNhAas+Gg a+DGCgEfmps geegt +alkC+AC CHRnFHR+e + PEQU_36005 71 AVKYKECLKNHAASIGGIATDGCGEFMPS-GEEGTLEALKCSACSCHRNFHRKEIDG 126 689***********************9.999******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	8.0E-30	72	124	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-22	72	127	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.2E-30	73	124	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.663	74	123	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.52E-19	185	258	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.9E-30	193	259	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.7E-26	197	253	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
EKRMDLLVHD GEIPIPISSN YVGGSGSHIP SQSHNSLPFH HHHLSNVSAL PLHSSPPLSY 60 SSPFNDKKTV AVKYKECLKN HAASIGGIAT DGCGEFMPSG EEGTLEALKC SACSCHRNFH 120 RKEIDGDHQS PSCEQCFNFK EGRKLITQKN TFLYNPTGNN LMFSKQYPQN QMILPFSAMQ 180 ASESNYMEGR FPPPVVKKRF RTKFSAEQKE KMLSFAEKVG WKLQKQEETV VQELCNEIGV 240 RRRVLKVWMH NNKHNFAKKA NNLQLE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	3e-23	198	255	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020593013.1	0.0	zinc-finger homeodomain protein 3-like
Swissprot	O64722	4e-65	ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBL	A0A2I0XDJ8	1e-160	A0A2I0XDJ8_9ASPA; ZF-HD homeobox protein
STRING	XP_008808961.1	1e-102	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP815	35	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	2e-59	homeobox protein 21

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]