PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_36237
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family G2-like
Protein Properties Length: 108aa    MW: 11850.6 Da    PI: 11.1381
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_36237genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.22.1e-2956105251
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                 pr+rWt+ LH++Fv+av++LGG+e+AtPk++lelm+vk Ltl+hvkSHLQ
  PEQU_36237  56 PRMRWTTSLHAHFVHAVQHLGGHERATPKSVLELMNVKELTLAHVKSHLQ 105
                 9************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.32E-1454105IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-2654105IPR009057Homeodomain-like
TIGRFAMsTIGR015578.3E-2256105IPR006447Myb domain, plants
PfamPF002499.4E-757105IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MTTATTPTTI PDLSLQISPP EMINSAALYG STKTKINGFK RSCRSVHGGK RSGRAPRMRW  60
TTSLHAHFVH AVQHLGGHER ATPKSVLELM NVKELTLAHV KSHLQSDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-1657105452Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-1657105452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-1657105452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-1657105452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-1657105452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-1657105452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-1657105452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-1657105452Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020597079.11e-71probable transcription factor KAN4
SwissprotQ9FJV55e-32KAN4_ARATH; Probable transcription factor KAN4
TrEMBLA0A2I0VMT93e-44A0A2I0VMT9_9ASPA; Putative transcription factor KAN4
STRINGGSMUA_Achr4P23160_0015e-38(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.27e-35G2-like family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA
    Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS.
    Plant Physiol., 2016. 172(4): p. 2403-2415
    [PMID:27794102]