PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_36853

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

MYB_related

Protein Properties

Length: 306aa MW: 34085.3 Da PI: 9.6297

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_36853	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.5	5.5e-12	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE++ l +v ++G g W+tI + +R+ ++k++w++ PEQU_36853 5 KQKWTSEEEDALRAGVDKHGAGKWRTIQKDPEfshclATRSNIDLKDKWRNM 56 79************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.075	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	9.72E-16	2	59	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-7	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-8	5	56	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-14	5	57	IPR009057	Homeodomain-like
CDD	cd11660	1.28E-20	6	57	No hit	No description
SMART	SM00526	4.4E-8	109	173	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	18.267	112	180	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	3.2E-6	115	171	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	2.61E-10	115	182	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	5.1E-9	115	174	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MGAPKQKWTS EEEDALRAGV DKHGAGKWRT IQKDPEFSHC LATRSNIDLK DKWRNMIVSA 60 NGQGIREKSR TPKTKALLAP QSSTQSSPIQ APAKFEKQPT AESIKPPQDA KIPSRYNAII 120 MEALTVLQEP NGCDIGAICK YIEQRMEIPS GFRRLLGSKL RRLVAQNKIE KGSRGYQLKD 180 PSFAIKTPTP MQKEPANRLK PLQASGFTKP IDPVEEAATT AAYKIADAEA KAFLASEAVK 240 EAEKISKMAE ETDSLLMLAK EIFERCKLSA CFIILSSRNK ICNSFWDPLT DHTIPSYVFI 300 YLTSEL

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00652	PBM	Transfer from LOC_Os01g51154	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020596283.1	0.0	single myb histone 4-like
Swissprot	Q6WLH4	7e-77	SMH3_MAIZE; Single myb histone 3
TrEMBL	A0A2I0X3P8	1e-162	A0A2I0X3P8_9ASPA; Telomere repeat-binding factor 5
STRING	XP_008797902.1	1e-132	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9247	34	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72740.2	6e-51	MYB_related family protein

Publications ? help Back to Top
Soderlund C, et al. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PLoS Genet., 2009. 5(11): p. e1000740 [PMID:19936069] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]