PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_36866
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family B3
Protein Properties Length: 466aa    MW: 52839.5 Da    PI: 7.4372
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_36866genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.58.5e-122032703198
                 .--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  31 eesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 +e+  l+++d sg++W +++++  +++s++yvl+ G     ++ +L++gD+v F++++  e++lv+++++
  PEQU_36866 203 PEGLPLKMQDASGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVSFSRID-PEGKLVMGFRK 270
                 455669**************9989999999***9.********************987.77777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010194.9E-7161271IPR003340B3 DNA binding domain
CDDcd100177.33E-11194270No hitNo description
SuperFamilySSF1019361.57E-10194270IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-18194273IPR015300DNA-binding pseudobarrel domain
PfamPF023628.3E-9203270IPR003340B3 DNA binding domain
PROSITE profilePS5105011.196427466IPR011124Zinc finger, CW-type
PfamPF074962.1E-6433465IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MLTDQTRRKG WKLRSGEHSD LCERCYSSFD NGNFCETFHS DAAGWRKCES CGKRIHCGCI  60
VSIPVYMLLD VGGVECMTCV RNTYSTVPNH IRSPPMVLSP QLLERSKEFS VKSWNQVSGS  120
FPGQWRHPAN IWNSSSIQSD LHQRLSYEFD RPNTDRLMAG ARSSFSPHEK KTVDIPERIA  180
SDGLNDVARD MNGKAYFPPI SQPEGLPLKM QDASGKEWVF QFRFWPNNNS RMYVLEGVTP  240
CIQSMQLQAG DTVSFSRIDP EGKLVMGFRK AANLSNNEQE IQAVKDGNDG SIPSDFKHTP  300
VDCLAIVPLR RHKGSTDSIN QTNATDKSGL SKIDKTGFIQ KDGCASMFHG ALCRKKGSFL  360
SSKSKRLRIE SEESIELKLT WEEAQILLRP ASNEAASVFS FEGHDFDEYE EAPVLGLPMY  420
FAKNHEGSIN SRWAQCEDCW KWRRLPLDSL LNHRWTCSDN KWDPER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C3e-4219327345125B3 domain-containing transcription repressor VAL1
5yzz_C3e-4219327345125B3 domain-containing transcription repressor VAL1
5z00_C3e-4219327345125B3 domain-containing transcription repressor VAL1
5z00_G3e-4219327345125B3 domain-containing transcription repressor VAL1
5z00_K3e-4219327345125B3 domain-containing transcription repressor VAL1
5z00_M3e-4219327345125B3 domain-containing transcription repressor VAL1
6j9a_A2e-4219427347126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020596222.10.0B3 domain-containing protein Os07g0563300-like isoform X4
SwissprotQ0D5G46e-90Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0E0ED451e-133A0A0E0ED45_9ORYZ; Uncharacterized protein
STRINGXP_008806760.11e-108(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.17e-78HSI2-like 1