PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_37220

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NAC

Protein Properties

Length: 298aa MW: 33889 Da PI: 7.6212

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_37220	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.1	4.4e-50	12	139	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 ppGfrFhPtd+el+++yL kkv+g+ + +i+++d+yk++PwdLp+k+ ++ ew+fFs+r++ky++g r+nra++sgyWkatg+dk++l++ + + PEQU_37220 12 PPGFRFHPTDQELITQYLWKKVSGSLPSDWAIIADIDLYKYNPWDLPEKALFGQGEWFFFSPRERKYPNGARPNRAAASGYWKATGTDKPILAAgNVQC 110 9*********************99888799***********87778899**********************************845556 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kk Lvfy+gr pkg+ktdWvm+eyrl PEQU_37220 111 IGVKKALVFYQGRPPKGTKTDWVMQEYRL 139 *************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-59	8	168	IPR003441	NAC domain
PROSITE profile	PS51005	58.324	11	168	IPR003441	NAC domain
Pfam	PF02365	4.9E-26	12	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MEGEELLSSQ FPPGFRFHPT DQELITQYLW KKVSGSLPSD WAIIADIDLY KYNPWDLPEK 60 ALFGQGEWFF FSPRERKYPN GARPNRAAAS GYWKATGTDK PILAAGNVQC IGVKKALVFY 120 QGRPPKGTKT DWVMQEYRLL DSMAPTQTQK QKSSMRLDDW VLCRVRMKGN TVGENDEMFM 180 ENSNVQPAQE NHAPVKDKNN SSEWGEHLKY LLESPSEGKE TSGEGSSHGF MWSSDHLSCV 240 NYGDAQQQEQ AHRSNDGWVT LLVNMQVYKH KKYSKKSAGK EDTVNYKSLP VESSRSSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-64	11	170	15	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. {ECO:0000250}.
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020585190.1	0.0	NAC transcription factor 32-like
Swissprot	A2YMR0	2e-73	NAC10_ORYSI; NAC transcription factor ONAC010
Swissprot	Q84TD6	2e-73	NAC47_ARATH; NAC transcription factor 47
TrEMBL	A0A2I0AFR3	1e-114	A0A2I0AFR3_9ASPA; NAC transcription factor NAM-B2
STRING	XP_008782049.1	2e-91	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13797	19	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	9e-76	NAC domain containing protein 47

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]