PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_37467

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NAC

Protein Properties

Length: 183aa MW: 21797 Da PI: 9.2138

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_37467	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.3	3.7e-50	24	149	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++ + + PEQU_37467 24 MPGFRFHPTEEELIEFYLRRKVEGKHFNV-ELITFLDLYRYDPWELPELAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRNESLRSI 121 79*************************.89***********8778899***********************************999* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 glkktLvfy+g+apkg +t+W+m+eyrl PEQU_37467 122 GLKKTLVFYSGKAPKGIRTTWIMNEYRL 149 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.54E-53	23	158	IPR003441	NAC domain
PROSITE profile	PS51005	51.105	23	167	IPR003441	NAC domain
Pfam	PF02365	2.2E-25	25	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MAIAAAMSND GEKDVDGHEH DLVMPGFRFH PTEEELIEFY LRRKVEGKHF NVELITFLDL 60 YRYDPWELPE LAAIGEKEWF FYVPRDRKYR NGDRPNRVTT SGYWKATGAD RMIRNESLRS 120 IGLKKTLVFY SGKAPKGIRT TWIMNEYRLP QSETDRFHMV IVLIVLDFRS PWDRRHNWKL 180 ITL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-54	8	149	2	142	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-54	8	149	2	142	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-54	8	149	2	142	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-54	8	149	2	142	NO APICAL MERISTEM PROTEIN
4dul_A	6e-54	8	149	2	142	NAC domain-containing protein 19
4dul_B	6e-54	8	149	2	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020598401.1	1e-115	NAC domain-containing protein 35-like, partial
Swissprot	Q9ZVP8	1e-87	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A2I0VV14	1e-105	A0A2I0VV14_9ASPA; NAC domain-containing protein 94
STRING	GSMUA_Achr3P21690_001	2e-97	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2826	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	5e-90	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]