PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_38150

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

MYB_related

Protein Properties

Length: 344aa MW: 37444.1 Da PI: 7.8625

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_38150	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.1	3.5e-12	90	134	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ Iar + Rt+ q+ s+ qky PEQU_38150 90 PWTEEEHRMFLLGLQRLGKGDWRGIARNFVISRTPTQVASHAQKY 134 8***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.974	83	139	IPR017930	Myb domain
SuperFamily	SSF46689	1.72E-16	85	140	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-18	86	138	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.9E-11	87	133	IPR009057	Homeodomain-like
SMART	SM00717	7.4E-11	87	137	IPR001005	SANT/Myb domain
CDD	cd00167	6.83E-9	90	135	No hit	No description
Pfam	PF00249	1.7E-10	90	134	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MARRCSHCSN NGHNSRTCPG RGGCGGVKLF GVRITEGAGA MKKSASMGNG ESPPDLARDH 60 AAAASGYASD DTGHASCSSN CRNERKKGTP WTEEEHRMFL LGLQRLGKGD WRGIARNFVI 120 SRTPTQVASH AQKYFIRQTN ATRRKRRTSL FDMVPEMPLD HVITLEDQSL DHGITLEDQS 180 LPHSPPNQSE TANNLLPCFR VGYVQEPQLT DFSSSKPSPE TKEDVLVNNI ALPLVSTFYP 240 TLVPVAFPLW PPNLSTPVIE EETMENHEVL RPTPVNRKDL TGADELVSIS KLSIGEGASN 300 RLEPSALSAK LLETAASRPS AFHMNPSMLR SGLSQNGGNV IHAV

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MARRCSHCSN NGHNSRTCPG RGGCGGVKLF GVRITEGAGA MKKSASMGNG ESPPDLARDH  60
AAAASGYASD DTGHASCSSN CRNERKKGTP WTEEEHRMFL LGLQRLGKGD WRGIARNFVI  120
SRTPTQVASH AQKYFIRQTN ATRRKRRTSL FDMVPEMPLD HVITLEDQSL DHGITLEDQS  180
LPHSPPNQSE TANNLLPCFR VGYVQEPQLT DFSSSKPSPE TKEDVLVNNI ALPLVSTFYP  240
TLVPVAFPLW PPNLSTPVIE EETMENHEVL RPTPVNRKDL TGADELVSIS KLSIGEGASN  300
RLEPSALSAK LLETAASRPS AFHMNPSMLR SGLSQNGGNV IHAV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020597532.1	0.0	LOW QUALITY PROTEIN: transcription factor MYBS3-like
TrEMBL	A0A482DGC8	0.0	A0A482DGC8_9ASPA; CCA-type MYB transcription factor 1g (Fragment)
STRING	XP_008791498.1	1e-134	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1939	37	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-82	MYB_related family protein