PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_38160
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family FAR1
Protein Properties Length: 277aa    MW: 32078 Da    PI: 9.7664
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_38160genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.82.7e-2180167290
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  Y++YA+ vGF+vrk+++++  ++++i+++++ C k+g+++e++ + ++ + ++a trtgC+a+++   + dg+w ++k+++ HnH+la
  PEQU_38160  80 HYCAYAHYVGFTVRKDHTTYWAKSKQIKSNDYICGKSGHKRESHLA-TTVKYRKADTRTGCQAMVRYAIDLDGNWTIKKFVESHNHPLA 167
                 69****************************************9999.8888999*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-1880167IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MRFCVNLRLS LGYFIIILCX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX VRNEEEAYKH YCAYAHYVGF TVRKDHTTYW AKSKQIKSND YICGKSGHKR  120
ESHLATTVKY RKADTRTGCQ AMVRYAIDLD GNWTIKKFVE SHNHPLAESG DKHLLRSSRK  180
ISELNANWLR SMIGFGIRAA DAFNFLASEV GGVENLECTR QDAYSFIQSD KRSRIEQGDA  240
NSLLRALFRS GDLTVRMVRW PIKFCRVENM GPACPRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020584372.11e-110putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A2I0VS862e-56A0A2I0VS86_9ASPA; Protein FAR1-RELATED SEQUENCE 5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1212587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-15FAR1-related sequence 5