PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_38453
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HD-ZIP
Protein Properties Length: 183aa    MW: 20565.1 Da    PI: 9.8947
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_38453genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-181872256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  PEQU_38453 18 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 72
                788899***********************************************98 PP
2HD-ZIP_I/II126.11.6e-4018108192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E d+e+Lkr++++l+een+rL+ke +eLr +lk
   PEQU_38453  18 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTELDCEQLKRCCETLTEENRRLQKELSELR-ALK 108
                  69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-17268IPR009057Homeodomain-like
SuperFamilySSF466892.01E-181175IPR009057Homeodomain-like
PROSITE profilePS5007117.2971474IPR001356Homeobox domain
SMARTSM003894.3E-161678IPR001356Homeobox domain
CDDcd000867.11E-151875No hitNo description
PfamPF000467.4E-161872IPR001356Homeobox domain
PROSITE patternPS0002704972IPR017970Homeobox, conserved site
SMARTSM003401.6E-2274117IPR003106Leucine zipper, homeobox-associated
PfamPF021831.9E-974108IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MERSSSRASD EEDNSGSRKK LRLSKEQSAF LEESFKEHST LNPKQKLALA KQLNLRPRQV  60
EVWFQNRRAR TKLKQTELDC EQLKRCCETL TEENRRLQKE LSELRALKSS QPFYMQLPAT  120
TLSMCPSCER VSSNSSSTAA TNPSSTAGSN PPAGSDKPPV PFVASLFPNP RFYPFAHQPS  180
AAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11622SRKKLRL
26674RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020586416.11e-130homeobox-leucine zipper protein HOX11-like isoform X2
SwissprotA2YW038e-80HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
TrEMBLA0A2I0WDR61e-104A0A2I0WDR6_9ASPA; Homeobox-leucine zipper protein HOX11
STRINGXP_010265939.12e-83(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-58homeobox from Arabidopsis thaliana