PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_38462

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

FAR1

Protein Properties

Length: 165aa MW: 19326.8 Da PI: 9.5467

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_38462	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.4	2e-17	33	117	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA++vGF+vrk+++++ ++++ + +++ C k +++e +++ + ++a trtg ka+++ + + +g+w v+k+ ++HnH+la PEQU_38462 33 YRAYAHHVGFTVRKDHTTYWPNSKKLKVKDYICGKADYKKEPNST---VKFRKADTRTGYKAMVRFHVDFEGNWTVAKFIENHNHHLA 117 9******************************999999998777...788999******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.3E-15	33	117	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MQFSEATHVC NDPIAEKFLS SIIHNEKETY ESYRAYAHHV GFTVRKDHTT YWPNSKKLKV 60 KDYICGKADY KKEPNSTVKF RKADTRTGYK AMVRFHVDFE GNWTVAKFIE NHNHHLAKSG 120 DKHLLRSSRR ISELNADVLR SMTGSDIRDG GWWCGEFRMH QEKCI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020574582.1	2e-84	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020592540.1	8e-84	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2I0VPA5	1e-40	A0A2I0VPA5_9ASPA; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2I0VS86	2e-41	A0A2I0VS86_9ASPA; Protein FAR1-RELATED SEQUENCE 5

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-10	FAR1-related sequence 5