PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_38579
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MIKC_MADS
Protein Properties Length: 172aa    MW: 20382.3 Da    PI: 5.4484
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_38579genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.92.7e-23958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien ++rq tf kRr g++KKA EL vLCda+ ++++fss+gkly y 
  PEQU_38579  9 KRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSSSGKLYHYH 58
                79**********************************************96 PP
2K-box22.35.5e-09881502082
       K-box  20 elakLkkeienLqreqRhl.lGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 
                 +++ ++k  e L+re+R + +Ge+ e+ ++  L+ +eq+Le ++kk+R+ K++ + +++e l +
  PEQU_38579  88 KVEEMEKMCEFLEREIRFMrIGEE-EEYTFPVLEVIEQNLEAAIKKVREEKDRKIQAEMESLHR 150
                 678899999999999997625666.999*******************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.002161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-33160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-28384IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-24323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.8E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.3482172IPR002487Transcription factor, K-box
PfamPF014861.3E-787150IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MARGRLEIKR IENPTQRQST FYKRRDGLFK KARELAVLCD ADLLLLLFSS SGKLYHYHSP  60
SVSNVQELLR RYEVASRTRI PTDQGGEKVE EMEKMCEFLE REIRFMRIGE EEEYTFPVLE  120
VIEQNLEAAI KKVREEKDRK IQAEMESLHR MVCSAPDFSS YFDFFFVDGF DF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-14183183MEF2 CHIMERA
6byy_B4e-14183183MEF2 CHIMERA
6byy_C4e-14183183MEF2 CHIMERA
6byy_D4e-14183183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020596715.11e-105MADS-box transcription factor 32-like
SwissprotQ8S1518e-60MAD32_ORYSJ; MADS-box transcription factor 32
TrEMBLA0A2I0VHD86e-87A0A2I0VHD8_9ASPA; MADS-box transcription factor 32
STRINGXP_008812160.12e-61(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119233439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.12e-19AGAMOUS-like 79
Publications ? help Back to Top
  1. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]