PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_39087

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

M-type_MADS

Protein Properties

Length: 61aa MW: 7032.26 Da PI: 10.8098

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_39087	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	102.9	1.2e-32	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrngi+KKA+ELSvLCdae+a+iifss+gkl+e+ PEQU_39087 9 KRIENKINRQVTFSKRRNGIMKKAYELSVLCDAEIALIIFSSRGKLFEFG 58 79**********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.473	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.1E-42	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.94E-31	2	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.61E-38	2	60	No hit	No description
PRINTS	PR00404	3.1E-33	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.8E-28	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-33	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 61 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGIMK KAYELSVLCD AEIALIIFSS RGKLFEFGSP 60 E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-22	1	61	1	61	MEF2C
5f28_B	1e-22	1	61	1	61	MEF2C
5f28_C	1e-22	1	61	1	61	MEF2C
5f28_D	1e-22	1	61	1	61	MEF2C
6byy_A	1e-22	1	61	1	61	MEF2 CHIMERA
6byy_B	1e-22	1	61	1	61	MEF2 CHIMERA
6byy_C	1e-22	1	61	1	61	MEF2 CHIMERA
6byy_D	1e-22	1	61	1	61	MEF2 CHIMERA
6bz1_A	1e-22	1	61	1	61	MEF2 CHIMERA
6bz1_B	1e-22	1	61	1	61	MEF2 CHIMERA
6bz1_C	1e-22	1	61	1	61	MEF2 CHIMERA
6bz1_D	1e-22	1	61	1	61	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269\|PubMed:19820190}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU058679	3e-61	KU058679.1 Cymbidium goeringii AGL6-3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020676503.1	1e-33	MADS-box transcription factor 6-like
Swissprot	Q7XUN2	2e-33	MAD17_ORYSJ; MADS-box transcription factor 17
TrEMBL	A0A2I0X4S5	9e-36	A0A2I0X4S5_9ASPA; MADS-box transcription factor 17
STRING	ORGLA02G0240800.1	3e-33	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	2e-35	AGAMOUS-like 6

Publications ? help Back to Top
Duan Y, et al. Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.). Plant Mol. Biol., 2012. 80(4-5): p. 429-42 [PMID:22933119] Hu Y, et al. Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development. Mol Plant, 2015. 8(9): p. 1366-84 [PMID:25917758] Bai X, et al. Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice. Sci Rep, 2016. 6: p. 19022 [PMID:26744119]