PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_39105

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

GRAS

Protein Properties

Length: 231aa MW: 25826.4 Da PI: 8.9876

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_39105	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	239.2	1.7e-73	2	228	138	373
GRAS 138 gppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235 +pps+RiTg gs + +l++t++rL++fA++l++pf+f++l++ + + +++++++ pgE+laVn+vl lh+ll++++ + +++L+ v+ l+ PEQU_39105 2 NPPSIRITGTGS----DLSTLRRTAHRLHSFASSLQLPFQFHPLLVPpSSQPSSTNAFHLCPGETLAVNCVLFLHNLLKSDGFRDA--HSFLRSVRALN 94 69********....9**********************97765888889********************88888887..9****** PP GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334 P vv+++e+ea h+s+sF +rf++ale+y+a+f+slea+lp++s+er+ vEr+++grei vv+ + +he++e+W+e++++aGF v+ls++a PEQU_39105 95 PVVVTLAEHEAGHSSPSFKDRFTKALEHYTAVFESLEATLPPTSRERMAVERVWFGREIAGVVSGDE-----KHERFERWEEMMRAAGFAGVNLSSFAI 188 ***********************************************************8654.....57********************* PP GRAS 335 kqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 +qa+lllr ++ +gy+++ +gs +lgW+++pL+svS+W PEQU_39105 189 SQARLLLRLHYpAEGYKLQVVRGSCFLGWQNKPLFSVSSW 228 ************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	32.813	1	208	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.0E-71	2	228	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010014	Biological Process	meristem initiation
GO:0010223	Biological Process	secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
ANPPSIRITG TGSDLSTLRR TAHRLHSFAS SLQLPFQFHP LLVPPSSQPS STNAFHLCPG 60 ETLAVNCVLF LHNLLKSDGF RDAHSFLRSV RALNPVVVTL AEHEAGHSSP SFKDRFTKAL 120 EHYTAVFESL EATLPPTSRE RMAVERVWFG REIAGVVSGD EKHERFERWE EMMRAAGFAG 180 VNLSSFAISQ ARLLLRLHYP AEGYKLQVVR GSCFLGWQNK PLFSVSSWHC N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-34	2	229	138	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020595277.1	1e-170	scarecrow-like protein 18, partial
Swissprot	Q9ZWC5	1e-78	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A2I0WBM1	1e-139	A0A2I0WBM1_9ASPA; Scarecrow-like protein 18
STRING	GSMUA_Achr1P19470_001	1e-101	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	2e-78	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]