PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_39374
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GATA
Protein Properties Length: 140aa    MW: 15380.5 Da    PI: 10.4316
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_39374genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA65.27.1e-213468135
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                C+ CgttkTplWR gp+g+k+LCnaCG++yrkk++
  PEQU_39374 34 CTDCGTTKTPLWRGGPSGPKSLCNACGIRYRKKRR 68
                ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-162887IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.9562882IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.33E-143171No hitNo description
Gene3DG3DSA:3.30.50.105.1E-173268IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.66E-143368No hitNo description
PROSITE patternPS0034403459IPR000679Zinc finger, GATA-type
PfamPF003201.5E-183468IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MNLSGDKATG SMDPNADQSS RDCELSISDG SKSCTDCGTT KTPLWRGGPS GPKSLCNACG  60
IRYRKKRRAV IGSTKERREA TRNSSNSKQM TSLKMRMMGF GREIIWKSGS FIRNQKNRGL  120
KEEEEAAILL MAISSGFIYA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020594640.14e-99GATA transcription factor 15-like
SwissprotQ8LG102e-34GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A2I0XID35e-75A0A2I0XID3_9ASPA; GATA transcription factor 15
STRINGXP_008797400.17e-44(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.11e-32GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]