PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_39447
Common NameMYB1
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB_related
Protein Properties Length: 203aa    MW: 23298.2 Da    PI: 6.3574
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_39447genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.2e-151055148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+  +eE++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
       PEQU_39447 10 RGNIGPEEEDLIIRLHCLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 55
                     677889****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-24160IPR009057Homeodomain-like
SuperFamilySSF466891.0E-14163IPR009057Homeodomain-like
PROSITE profilePS5129423.928559IPR017930Myb domain
SMARTSM007173.0E-13957IPR001005SANT/Myb domain
PfamPF002491.1E-131055IPR001005SANT/Myb domain
CDDcd001675.54E-101555No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MNYLRPDIKR GNIGPEEEDL IIRLHCLLGN RWSLIAGRLP GRTDNEIKNY WNSHLSKKLK  60
KQGFIIRECT PRPKRSGAPS YHKKIKCTNN KFAENIQNND ADECNKIYAP KPTRLKPCWS  120
VMEKSESTIG ECKKGTSDAS SGTNDVDWAS WTHEDHVEEF DQTAGLFEGP YLDFASDFSM  180
PNIESLDRLF NEYSQLLQLE VDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-1325951108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7694660.0KF769466.1 Phalaenopsis equestris MYB transcription factor 1 (MYB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020596936.11e-152transcription factor MYB3-like
TrEMBLA0A096ZX301e-149A0A096ZX30_PHAEQ; MYB transcription factor 1
STRINGXP_008790514.19e-49(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.18e-31myb domain protein 5