PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_39488

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

LBD

Protein Properties

Length: 189aa MW: 20151.1 Da PI: 10.0411

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_39488	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.9	1.2e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p++ r+d+++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e PEQU_39488 4 SCNGCRVLRKGCSESCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLINAGPDHLRPDIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQSAVES 102 6***********************************************************************************************999 PP DUF260 95 allke 99 +l+++ PEQU_39488 103 VLRGS 107 88766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.587	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.4E-25	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSESCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINAGPDH 60 LRPDIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQSAV ESVLRGSPIV SISSETAAAS 120 PVPPIVGYDI RHVSKESGGG GGGDFAAELH KAGKCRTRFK RSGADLKARA RAPRKAAAAA 180 VASPESSER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020594517.1	1e-114	LOB domain-containing protein 41-like, partial
Swissprot	Q9M886	1e-79	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2H3YIS0	1e-92	A0A2H3YIS0_PHODC; LOB domain-containing protein 41
STRING	XP_008799243.1	2e-93	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	3e-81	LOB domain-containing protein 41