PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_39702

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

ERF

Protein Properties

Length: 57aa MW: 6589.66 Da PI: 12.1689

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_39702	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59	1.2e-18	1	50	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIr p+ +g r++lg+f+ta +Aa+a++ a+ +++g PEQU_39702 1 YRGVRKRP-WGKFAAEIRNPKRRG--SRIWLGTFDTAVQAARAYDCAAFRMRG 50 9*****.******96554..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.63E-23	1	57	No hit	No description
Pfam	PF00847	5.1E-14	1	50	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.0E-31	1	57	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.775	1	57	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.84E-22	1	57	IPR016177	DNA-binding domain
PRINTS	PR00367	2.4E-11	1	12	IPR001471	AP2/ERF domain
SMART	SM00380	2.5E-27	1	57	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.4E-11	24	40	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 57 aa Download sequence Send to blast
YRGVRKRPWG KFAAEIRNPK RRGSRIWLGT FDTAVQAARA YDCAAFRMRG SKAILNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-26	1	57	6	62	ATERF1
3gcc_A	2e-26	1	57	6	62	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:9756931}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020588231.1	5e-32	ethylene-responsive transcription factor ERF105-like
Swissprot	O80341	7e-31	EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBL	A0A0L9TV10	8e-30	A0A0L9TV10_PHAAN; Uncharacterized protein
TrEMBL	A0A165XBI9	3e-30	A0A165XBI9_DAUCS; Uncharacterized protein
STRING	XP_007145468.1	3e-30	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47230.1	3e-33	ethylene responsive element binding factor 5

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]