PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_39821
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 222aa    MW: 25977.9 Da    PI: 11.5509
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_39821genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.71e-16185222243
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAa 43 
                 +++GVr+++ +grW+AeIrdp   ++rkr++lg+f taeeAa
  PEQU_39821 185 RFRGVRRRP-WGRWAAEIRDP---NRRKRVWLGTFNTAEEAA 222
                 79*******.**********8...335**************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.00E-20184222No hitNo description
PfamPF008474.6E-11185222IPR001471AP2/ERF domain
SMARTSM003803.0E-10185222IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-14185222IPR016177DNA-binding domain
PROSITE profilePS5103219.124185222IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-19185222IPR001471AP2/ERF domain
PRINTSPR003672.2E-10186197IPR001471AP2/ERF domain
PRINTSPR003672.2E-10208222IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MLHAYLASFV TCIPSSIFSF FLANLQSPPK TLVAACARKP RECLQILFRF FFRFYFRVPS  60
QSFHETSNRL LGTRSEAEST DLIAISTRIH HMDFPDFPVK FSEHVLTKTR KLISTGKTRD  120
LKRKLVRIFF TDKDATDSSS SDDDSLSLTR RRVKRHVHEI GFQIGHRFRR PTPAKRLSES  180
CDLKRFRGVR RRPWGRWAAE IRDPNRRKRV WLGTFNTAEE AA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189208RRRPWGRWAAEIRDPNRRKR
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020594495.11e-160pathogenesis-related genes transcriptional activator PTI6-like
SwissprotQ9SUE35e-26CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A2I0VEQ11e-73A0A2I0VEQ1_9ASPA; PTI6
STRINGXP_008810850.14e-35(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15640615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-12cytokinin response factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]