PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_39886
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family M-type_MADS
Protein Properties Length: 80aa    MW: 9095.64 Da    PI: 9.9956
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_39886genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF103.67e-331463150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ 
  PEQU_39886 14 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 63
                79**********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.571666IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-41665IPR002100Transcription factor, MADS-box
CDDcd002652.52E-38764No hitNo description
SuperFamilySSF554551.31E-30766IPR002100Transcription factor, MADS-box
PROSITE patternPS003500862IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-34828IPR002100Transcription factor, MADS-box
PfamPF003192.7E-281562IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-342843IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-344364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
RESERMGRGR VELKRIENKI NRQVTFSKRR NGLLKKAYEL SVLCDAEVAL IIFSSRGKLY  60
EFGSAGYSLS FSVCVCLLCT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-21666161MEF2C
5f28_B6e-21666161MEF2C
5f28_C6e-21666161MEF2C
5f28_D6e-21666161MEF2C
6byy_A6e-21666161MEF2 CHIMERA
6byy_B6e-21666161MEF2 CHIMERA
6byy_C6e-21666161MEF2 CHIMERA
6byy_D6e-21666161MEF2 CHIMERA
6bz1_A6e-21666161MEF2 CHIMERA
6bz1_B6e-21666161MEF2 CHIMERA
6bz1_C6e-21666161MEF2 CHIMERA
6bz1_D6e-21666161MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397558.15e-36PREDICTED: MADS-box transcription factor 6-like
RefseqXP_028117326.13e-36agamous-like MADS-box protein AGL6 isoform X7
SwissprotQ7XUN25e-36MAD17_ORYSJ; MADS-box transcription factor 17
TrEMBLC6F9J93e-38C6F9J9_PSEMZ; Truncated MADS-box transcription factor (Fragment)
TrEMBLC6F9M13e-38C6F9M1_9SPER; Truncated MADS-box transcription factor (Fragment)
STRINGORGLA02G0240800.17e-37(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.12e-37AGAMOUS-like 6
Publications ? help Back to Top
  1. Duan Y, et al.
    Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).
    Plant Mol. Biol., 2012. 80(4-5): p. 429-42
    [PMID:22933119]
  2. Hu Y, et al.
    Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
    Mol Plant, 2015. 8(9): p. 1366-84
    [PMID:25917758]
  3. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]