PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_39933
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB_related
Protein Properties Length: 118aa    MW: 13830.5 Da    PI: 5.6157
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_39933genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.6e-18751248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     gr+T+eE+ l+++++ ++G++ W+ Ia +++ gRt++++k++w++++
       PEQU_39933  7 GRMTPEEEHLILELHSKWGNK-WSQIAGKLP-GRTDNEIKNYWRTHM 51
                     89*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.098155IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-22253IPR009057Homeodomain-like
SuperFamilySSF466892.84E-15256IPR009057Homeodomain-like
SMARTSM007179.9E-15553IPR001005SANT/Myb domain
PfamPF002494.2E-16750IPR001005SANT/Myb domain
CDDcd001671.38E-9851No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
HPGLKHGRMT PEEEHLILEL HSKWGNKWSQ IAGKLPGRTD NEIKNYWRTH MRKMAQEKKR  60
NSPSSSSSSS SFSNGMENQE EVSFIVTMAE EKEEEVKVEV YPMDQLWNEM EFSSVWEC
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020577748.11e-81myb-related protein MYBAS2-like
SwissprotQ9LX825e-34MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A455LAB01e-39A0A455LAB0_9ASPA; Myb-related protein MYBAS2-like protein (Fragment)
STRINGXP_008457537.12e-34(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.35e-33myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]