PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_40072
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GATA
Protein Properties Length: 100aa    MW: 11189.8 Da    PI: 10.9791
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_40072genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.3e-172963135
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                Cs+C +  Tp+WR gp g+ktLCnaCG+++++ +l
  PEQU_40072 29 CSHCLSHRTPQWRAGPLGPKTLCNACGVRFKSGRL 63
                *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.4E-142373IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.0022359IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.95E-152587No hitNo description
Gene3DG3DSA:3.30.50.104.9E-142764IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.06E-112875No hitNo description
PROSITE patternPS0034402954IPR000679Zinc finger, GATA-type
PfamPF003201.9E-152963IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MEKLDKHQGK ANNGNGNGGE LHPLQPRRCS HCLSHRTPQW RAGPLGPKTL CNACGVRFKS  60
GRLHPEYRPA KSPTFVSYKH SNSHKKVMEM RMAVLSSNSK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020587604.12e-69GATA transcription factor 5-like
SwissprotO497412e-34GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A2I0VN211e-52A0A2I0VN21_9ASPA; GATA transcription factor 4
STRINGGSMUA_Achr2P12730_0015e-46(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59623656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.17e-36GATA transcription factor 4
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]