PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_40176

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

GRAS

Protein Properties

Length: 135aa MW: 15346 Da PI: 6.2647

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_40176	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	83.7	3.2e-26	1	120	199	317
GRAS 199 gEalaVnlvlqlhrlldesvs..leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 gEal++n++++ hr++des++ + s+r+ + k+++sl+P +vv+v++ead ++++ ++r+ a++y++ fd++e+ l+ seer+ +E + + ++i+ PEQU_40176 1 GEALVINCHMMPHRIPDESAAggMISPRTMFAKALRSLEPSLVVIVDEEADFTASDVVTRLRAAFNYMWIPFDAVETFLAVGSEERRRYEGA-VCWRIE 98 7**************997633667*************************************************************9.999* PP GRAS 296 nvvacegaerrerhetlekWre 317 nv+a eg++r+er e+ ++W+ PEQU_40176 99 NVIAEEGEQRVERLERRGRWHX 120 ********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	14.151	1	135	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-23	1	120	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
GEALVINCHM MPHRIPDESA AGGMISPRTM FAKALRSLEP SLVVIVDEEA DFTASDVVTR 60 LRAAFNYMWI PFDAVETFLA VGSEERRRYE GAVCWRIENV IAEEGEQRVE RLERRGRWHX 120 XSGRLCWTSI RRGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020679482.1	8e-67	scarecrow-like protein 32
Swissprot	Q2V2T9	2e-42	SCL16_ARATH; Putative scarecrow-like protein 16
TrEMBL	A0A2I0VR92	2e-65	A0A2I0VR92_9ASPA; Scarecrow-like protein 32
STRING	GSMUA_Achr10P11390_001	2e-49	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5697	37	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67411.1	6e-45	GRAS family protein